Jahr 2024
Paper-based optical nose arrays and untargeted GC-IMS for the adulteration detection of cherry seed oils
Microchemical Journal (2024). Vol. 209, 112610.
https://doi.org/10.1016/j.microc.2024.112610, IF: 4,9
Mahsa Chaharlangi1, Javad Tashkhourian1, Philipp Weller2, Lukas Bodenbender2, Bahram Hemmateenejad1
1Chemistry Department, Shiraz University, Shiraz 71454, Iran
2Institute for Instrumental Analytics and Bioanalytics, Technische Hochschule Mannheim, 68163 Mannheim, Germany
Self-Supervised and Zero-Shot Learning in Multi-modal Raman Light Sheet Microscopy
Sensors 2024, 24(24), 8143
doi.org/10.3390/s24248143, IF: 3,4
Pooja Kumari1, Johann Kern2, Matthias Rädle1
1CeMOSResearch and Transfer Center, Technische Hochschule Mannheim, 68163 Mannheim, Germany
2Universitätsklinikum Mannheim, Universität Heidelberg, 68167 Mannheim, Germany
A spheroid whole mount drug testing pipeline with machine-learning based image analysis identifies cell-type specific differences in drug efficacy on a single-cell level
BMC Cancer 24, 1542 (2024)
doi.org/10.1186/s12885-024-13329-9, IF: 3,8
Mario Vitacolonna1, 2, Roman Bruch3, Richard Schneider4, Julia Jabs4, Mathias Hafner2, 5, Markus Reischl3 and Rüdiger Rudolf1, 2
1CeMOS, Technische Hochschule Mannheim, 68163 Mannheim, Germany
2Institute of Molecular and Cell Biology, Technische Hochschule Mannheim, 68163 Mannheim, Germany
3Institute for Automation and Applied Informatics, Karlsruhe Institute of Technology, 76344 Eggenstein-Leopoldshafen, Germany
4Merck Healthcare KGaA, 64293 Darmstadt, Germany
5Institute of Medical Technology, Medical Faculty Mannheim of Heidelberg University, Technische Hochschule Mannheim, 68167 Mannheim, Germany
Are 3D Tumor Cell Spheroids a Utile System for the In Vitro Evaluation of Diagnostic Radiotracers?
ACS Omega
https://doi.org/10.1021/acsomega.4c08214 , IF: 3,7
Benedikt Judmann1, 2, Florian Keller2, 3, Björn Wängler2, 4, Ralf Schirrmacher5, Rüdiger Rudolf2, 3, Carmen Wängler1, 2
1Heidelberg University, Medical Faculty Mannheim, Biomedical Chemistry, Theodor-Kutzer-Ufer 1-3, 68167 Mannheim, Germany
2Medical Faculty Mannheim, Research Campus MOLIE, Heidelberg University, Theodor-Kutzer-Ufer 1-3, 68167 Mannheim, Germany
3Technische Hochschule Mannheim, CeMOS, Paul-Wittsack-Straße 10, 68163 Mannheim, Germany
4Medical Faculty Mannheim, Molecular Imaging and Radiochemistry, Heidelberg University, Theodor-Kutzer-Ufer 1-3, 68167 Mannheim, Germany
5Department of Oncology, Division of Oncological Imaging, University of Alberta, Edmonton, Alberta, Canada T6G 1Z2.
Mass-Guided Single-Cell MALDI Imaging of Low-Mass Metabolites Reveals Cellular Activation Markers
Advanced Science (2024)
doi.org/10.1002/advs.202410506, IF: 14,3
James L. Cairns1, 2, Johanna Hubert1, Andrea Lewen3, Jessica Jung4, 5, 6, Stefan J. Maurer7, 8, Tobias Bausbacher1, Stefan Schmidt1, Pavel A. Levkin9, 10, Daniel Sevin11, Kerstin Göpfrich7, 8, Philipp Koch4, 5, 6, 12, Oliver Kann3, 13, Carsten Hopf1, 2, 12
1Center for Mass Spectrometry and Optical Spectroscopy, CeMOS, Technische Hochschule Mannheim, 68163, Mannheim, Germany
2Medical Faculty, Heidelberg University, 69120, Heidelberg, Germany
3Institute of Physiology and Pathophysiology, Heidelberg University, 69120, Heidelberg, Germany
4Dept. Translational Brain Research, Central Institute for Mental Health (CIMH), 68159, Mannheim, Germany
5German Cancer Research Center (DKFZ), 69120, Heidelberg, Germany
6Hector Institute for Translational Brain Research (HITBR gGmbH), 68159, Mannheim, Germany
7Biophysical Engineering Group, Center for Molecular Biology of Heidelberg University (ZMBH), 69120, Heidelberg, Germany
8Biophysical Engineering Group, Max-Planck Institute for Medical Research, 69120, Heidelberg, Germany
9Institute of Biological and Chemical Systems - Functional Molecular Systems (IBCS-FMS), Karlsruhe Institute of Technology, 76344, Karlsruhe, Germany
10Institute of Organic Chemistry, Karlsruhe Institute of Technology, 76344, Karlsruhe, Germany
11Cellzome - A GSK company, 69115, Heidelberg, Germany
12Mannheim Center for Translational Neuroscience (MCTN), Heidelberg University, 68167, Mannheim, Germany
13Interdisciplinary Center for Neurosciences (IZN), Heidelberg University, 69120, Heidelberg, Germany
How Machine Learning and Gas Chromatography-Ion Mobility Spectrometry Form an Optimal Team for Benchtop Volatilomics
Analytical Chemistry (2024)
https://doi.org/10.1021/acs.analchem.4c03496, IF: 6,8
Hadi Parastar1, Philipp Weller2
1Department of Chemistry, Sharif University of Technology, P.O. Box 11155-9516, Tehran, Iran
2Institute for Instrumental Analytics and Bioanalytics, Technische Hochschule Mannheim, 68163, Mannheim, Germany
Model-Based Scale-Up of a Homogeneously Catalyzed Sonogashira Coupling Reaction in a 3D Printed Continuous-Flow Reactor
ACS Engineering Au (2024)
https://doi.org/10.1021/acsengineeringau.4c00027, IF: 4,3
Lisa Schulz1, 2, Norbert Kockmann2, Thorsten Röder1
1Institute of Chemical Process Engineering, Technische Hochschule Mannheim, 68163 Mannheim (Germany)
2Laboratory of Equipment Design, Department of Biochemical and Chemical Engineering, TU Dortmund University, 44227 Dortmund (Germany)
TET3 regulates terminal cell differentiation at the metabolic level
Nature Communications (2024). Nov 18;15(1):9749
doi.org/10.1038/s41467-024-54044-0, IF: 14,7
Isabel Mulet1, Carmen Grueso-Cortina1, Mireia Cortés-Cano1, Daniela Gerovska2, Guangming Wu3 4, Stefania Alexandra Iakab5, Daniel Jimenez-Blasco6 7 8, Andrea Curtabbi9, Pablo Hernansanz-Agustín9, Harmony Ketchum10 11 12, Israel Manjarrés-Raza6 7 8, F. Thomas Wunderlich13, Juan Pedro Bolaños6 7 8, Meelad M. Dawlaty10 11 12, Carsten Hopf5 14, José Antonio Enríquez8 9, Marcos J. Araúzo-Bravo2 15 16, Natalia Tapia17
1Stem Cell Molecular Genetics Unit, Institute of Biomedicine of Valencia, Spanish National Research Council, Valencia, Spain
2Group of Computational Biology and Systems Biomedicine, Biogipuzkoa Health Research Institute, San Sebastián, Spain
3Guangzhou National Laboratory, Guangzhou, China
4Department of Obstetrics and Gynecology, the Third Affiliated Hospital of Guangzhou Medical University, Guangzhou, China
5Center for Mass Spectrometry and Optical Spectroscopy, Manheim University of Applied Sciences, Mannheim, Germany
6Institute of Functional Biology and Genomics, University of Salamanca, Spanish National Research Council, Salamanca, Spain
7Institute of Biomedical Research of Salamanca, Salamanca, Spain
8Center of Biomedical Networking Research for Frailty and Healthy Ageing, Madrid, Spain
9Cardiovascular Regeneration Program, Centro Nacional de Investigaciones Cardiovasculares (CNIC), Madrid, Spain
10Ruth L. and David S. Gottesman Institute for Stem Cell and Regenerative Medicine Resarch, Albert Einstein College of Medicine, New York, USA
11Department of Genetics, Albert Einstein College of Medicine, New York, USA
12Department of Developmental & Molecular Biology, Albert Einstein College of Medicine, New York, USA
13Max Planck Institute for Metabolism Research, Cologne, Germany
14Medical Faculty, Heidelberg University, Heidelberg, Germany
15IKERBASQUE, Basque Foundation for Science, Bilbao, Spain
16Department of Cell Biology and Histology, Faculty of Medicine and Nursing, University of Basque Country (UPV/EHU), Leioa, Spain
17Stem Cell Molecular Genetics Unit, Institute of Biomedicine of Valencia, Spanish National Research Council, Valencia, Spain. ntapia@ibv.csic.es
M2ara: unraveling metabolomic drug responses in whole-cell MALDI mass spectrometry bioassays
Bioinformatics (2024)
doi.org/10.1093/bioinformatics/btae694, IF: 4,4
Thomas Enzlein1, Alexander Geisel1, Carsten Hopf1 2 3, Stefan Schmidt1
1Center for Mass Spectrometry and Optical Spectroscopy (CeMOS), Technische Hochschule Mannheim, Mannheim, 68165
2Medical Faculty, Heidelberg University, Heidelberg, 69117, Germany
3Mannheim Center for Translational Neuroscience (MCTN), Medical Faculty Mannheim, Heidelberg University, Mannheim, 68167, Germany
Non-targeted volatilomics for the authentication of saffron by gas chromatography-ion mobility spectrometry and multivariate curve resolution
Food Chemistry (2004), Volume 465, Part 2, 142074, ISSN 0308-8146,
doi.org/10.1016/j.foodchem.2024.142074, IP: 8,5
Hadi Parastar1, Hassan Yazdanpanah2 3, Philipp Weller4
1Department of Chemistry, Sharif University of Technology, P.O. Box 11155-9516, Tehran, Iran
2Food Safety Research Center, Shahid Beheshti University of Medical Sciences, Tehran, Iran
3Toxicology and Pharmacology Department, School of Pharmacy, Shahid Beheshti University of Medical Sciences, Tehran, Iran
4Institute for Instrumental Analytics and Bioanalytics, Technische Hochschule Mannheim, 68163 Mannheim, Germany
Advanced Imaging Integration: Multi-Modal Raman Light Sheet Microscopy Combined with Zero-Shot Learning for Denoising and Super-Resolution
Sensors 2024, 24(21), 7083;
doi.org/10.3390/s24217083, IF: 3,4
Pooja Kumari1, Shaun Keck1, Emma Sohn2, Johann Kern2, Matthias Rädle1
1CeMOS Research and Transfer Center, University of Applied Science, 68163 Mannheim, Germany
2Universitätsklinikum Mannheim, Universität Heidelberg, 68167 Mannheim, Germany
Label-free assessment of complement-dependent cytotoxicity of therapeutic antibodies via a whole-cell MALDI mass spectrometry bioassay
Scientific Reports 14, 21462 (2024),
doi.org/10.1038/s41598-024-71483-3, IF: 3,8
Stefan Schmidt1, Alexander Geisel1, Thomas Enzlein1, Björn C. Fröhlich1, Louise Pritchett2, Melanie Verneret2, Christian Graf3, Carsten Hopf1,4, 5
1Center for Mass Spectrometry and Optical Spectroscopy (CeMOS), Technische Hochschule Mannheim, Paul-Wittsack-Str. 10, 68163, Mannheim, Germany
2Novartis Pharma AG, Technical Research & Development Biologics, Klybeckstr. 141, 4056, Basel, Switzerland
3Novartis Business Services GmbH, Technical Research & Development Biologics, Oskar-von-Miller-Ring 33, 80333, München, Germany
4Medical Faculty, Heidelberg University, 69117, Heidelberg, Germany
5Mannheim Center for Translational Neuroscience (MCTN), 68167, Mannheim, Germany
From in vitro to in silico: a pipeline for generating virtual tissue simulations from real image data
Frontiers in Molecular Biosciences (2024), Vol. 11,
doi.org/10.3389/fmolb.2024.1467366, IF: 3,9
Elina Nürnberg1,2,3, Mario Vitacolonna1,2, Roman Bruch4, Markus Reischl4, Rüdiger Rudolf1,2, Simeon Sauer3
1Center for Mass Spectrometry and Optical Spectroscopy (CeMOS), Technische Hochschule Mannheim, Mannheim, Germany
2Institute of Molecular and Cell Biology, Technische Hochschule Mannheim, Mannheim, Germany
3Faculty of Biotechnology, Technische Hochschule Mannheim, Mannheim, Germany
4Institute for Automation and Applied Informatics, Karlsruhe Institute of Technology, Eggenstein-Leopoldshafen, Germany
Chiral Trapped Headspace GC-QMS-IMS: Boosting Untargeted Benchtop Volatilomics to the Next Level
Chemosensors (2024), 12(8), 165;
doi.org/10.3390/chemosensors12080165, IF: 3,7
Lukas Bodenbender1,2, Sascha Rohn2, Simeon Sauer3, Markus Jungen4, Philipp Weller1
1Institute for Instrumental Analytics and Bioanalytics, Technische Hochschule Mannheim, Paul-Wittsack-Str. 10, 68163 Mannheim, Germany
2Department of Food Chemistry and Analysis, Institute of Food Technology and Food Chemistry, Technische Universität Berlin, Gustav-Meyer-Allee 25, 13355 Berlin, Germany
3Faculty of Biotechnology, Technische Hochschule Mannheim, Paul-Wittsack-Str. 10, 68163 Mannheim, Germany
4SGF International e.V., Marie-Curie-Ring 10a, 55291 Saulheim, Germany
A multiparametric analysis including single-cell and subcellular feature assessment reveals differential behavior of spheroid cultures on distinct ultra-low attachment plate types
Frontiers in Bioengineering and Biotechnology (2024), Volume 12, doi.org/10.3389/fbioe.2024.1422235, IF: 4,3
Mario Vitacolonna1, 2, Roman Bruch3, Ane Agaçi1, 2, Elina Nürnberg1, 2, 4, Tiziana Cesetti1, 2, Florian Keller1, 2, Francesco Padovani5, Simeon Sauer4, Kurt M. Schmoller5, Markus Reischl3, Mathias Hafner2, 6, Rüdiger Rudolf1, 2, 6
1CeMOS, Technische Hochschule Mannheim, Mannheim, Germany
2Institute of Molecular and Cell Biology, Technische Hochschule Mannheim, Mannheim, Germany
3Institute for Automation and Applied Informatics, Karlsruhe Institute of Technology, Karlsruhe, Germany
4Faculty of Biotechnology, Technische Hochschule Mannheim, Mannheim, Germany
5Institute of Functional Epigenetics (IFE), Molecular Targets and Therapeutics Center (MTTC), Helmholtz Center München, München-Neuherberg, Germany
6Institute of Medical Technology, Medical Faculty Mannheim of Heidelberg University and Technische Hochschule Mannheim, Mannheim, Germany
The phosphatase RosC from Streptomyces davaonensis is used for roseoflavin biosynthesis and has evolved to largely prevent dephosphorylation of the important cofactor riboflavin-5’-phosphate
Journal of Molecular Biology (2024), 168734, ISSN 0022-2836,
doi.org/10.1016/j.jmb.2024.168734, IF: 4,7
Tanya Joshi1, Ulrike Demmer2, Carmen Schneider1, Theresa Glaser1, Eberhard Warkentin2, Ulrich Ermler2, Matthias Mack1
1Institute for Technical Microbiology, Department of Biotechnology, Technische Hochschule Mannheim, 68163 Mannheim, Germany
2Max-Planck-Institute for Biophysics, Max-von-Laue-Strasse 3, 60438 Frankfurt am Main, Germany
Alzheimer’s disease linked Aβ42 exerts product feedback inhibition on γ-secretase impairing downstream cell signaling
Journal: eLife (2024),
doi.org/10.7554/eLife.90690.3, IF: 6,4
Katarzyna Marta Zoltowska1, Utpal Das2, Sam Lismont1, Thomas Enzlein1,3, Masato Maesako4, Mei CQ Houser4, Maria Luisa Franco5, Burcu Özcan1, Diana Gomes Moreira1, Dmitry Karachentsev2, Ann Becker2, Carsten Hopf3, 6, 7, Marçal Vilar5, Oksana Berezovska4, William Mobley2 , Lucía Chávez-Gutiérrez1
1IB-KU Leuven Center for Brain & Disease Research, Belgium
2Department of Neurosciences, University of California San Diego, United States
3Center for Mass Spectrometry and Optical Spectroscopy (CeMOS), Technische Hochschule Mannheim, Germany
4Department of Neurology, Massachusetts General Hospital/Harvard Medical School, United States
5Molecular Basis of Neurodegeneration Unit, Instituto de Biomedicina de Valencia, Spain
6Medical Faculty, Heidelberg University, Germany; Mannheim Center for Translational Neuroscience (MCTN)
7Medical Faculty Mannheim, Heidelberg University, Germany
Optical imaging of ferroelectric domains in periodically poled lithium niobate using ferroelectric liquid crystals
Opto-Electronics Review 32 (2024), e150611,
doi.org/10.24425/opelre.2024.150611, IF: 1,6
Patrick A. Meier1, Susanne Keuker-Baumann1, Thorsten Röder1,2, Harald Herrmann1, Raimund Ricken1, Christine Silberhorn1, Heinz-S. Kitzerow1
1Faculty of Science and Center for Optoelectronics and Photonics Paderborn (CeOPP), Paderborn University, Warburger Straße 100, 33098 Paderborn, Germany
2Institut für Chemische Verfahrenstechnik, Technische Hochschule Mannheim, Paul-Wittsack-Straße 10, 68163 Mannheim, Germany
Autonomous Online Optimization in Flash Chemistry Using Online Mass Spectrometry
Journal: Organic Process Research & Development (2024), https://doi.org/10.1021/acs.oprd.3c00397, IF: 3,1
Claudio Lehmann1, Kevin Eckey2, Maria Viehoff2, Christoph Greve2, Thorsten Röder1
1Institute of Chemical Process Engineering, Technische Hochschule Mannheim, Paul-Wittsack-Str. 10, 68163 Mannheim, Germany
2Merck KGaA, Frankfurter Str. 250, 64293 Darmstadt, Germany
Mutation of the Plasmodium falciparum Flavokinase Confers Resistance to Roseoflavin and 8-Aminoriboflavin
Journal: ACS Infectious Diseases, https://doi.org/10.1021/acsinfecdis.4c00289, IF: 4,0
Ayman Hemasa1, Christina Spry1, Matthias Mack2, Kevin J. Saliba1
1Research School of Biology, The Australian National University, Canberra, ACT 2601, Australia
2Institute for Technical Microbiology, Department of Biotechnology, Technische Hochschule Mannheim, Mannheim 68163, Germany
Aberrant evoked calcium signaling and nAChR cluster morphology in a SOD1 D90A hiPSC-derived neuromuscular model
Journal: Frontiers in Cell and Developmental Biology, https://doi.org/10.3389/fcell.2024.1429759, IF: 5,5
Nathalie Couturier1,2, Sarah Janice Hörner1,2, Elina Nürnberg1, Claudio Joazeiro3, Mathias Hafner4,5, Rüdiger Rudolf1,2,4,5
1CeMOS, Technische Hochschule Mannheim, Mannheim, Germany
2Interdisciplinary Center for Neurosciences, Heidelberg University, Heidelberg, Germany
3Center for Molecular Biology, Heidelberg University, Heidelberg, Germany
4Institute of Molecular and Cell Biology, Technische Hochschule Mannheim, Mannheim, Germany
5Institute of Medical Technology, Technische Hochschule Mannheim and Heidelberg University, Mannheim, Germany
Integrative Single-Plaque Analysis Reveals Signature Aβ and Lipid Profiles in the Alzheimer’s Brain
Journal: Analytical Chemistry, DOI: 10.1021/acs.analchem.3c05557, IF: 7,4
Thomas Enzlein1, 2, 3, Tammaryn Lashley4, Denis Abu Sammour1, Carsten Hopf1, 5, 6, Lucía Chávez-Gutiérrez2, 3
1Center for Mass Spectrometry and Optical Spectroscopy (CeMOS), Technische Hochschule Mannheim, Paul-Wittsack Str. 10, Mannheim 68163, Germany.
2KU Leuven-VIB Center for Brain & Disease Research, VIB, Leuven 3000, Belgium.
3Department of Neurosciences, Leuven Institute for Neuroscience and Disease, KU Leuven, Leuven 3000, Belgium.
4Department of Neurodegenerative Diseases, UCL Queen Square Institute of Neurology, London WC1N 3BG, U.K.
5Mannheim Center for Translational Neuroscience (MCTN), Medical Faculty Mannheim, Heidelberg University, Heidelberg 69120, Germany.
6Medical Faculty, Heidelberg University, Heidelberg 69120, Germany.
Quantitative Analysis of Chlorogenic Acid during Coffee Roasting via Raman Spectroscopy
Journal: Chemosensors, https://doi.org/10.3390/chemosensors12060106, IF: 4,2
Deborah Herdt1, Tobias Teumer2, Shaun Paul Keck3,† Thomas Kunz4, Victoria Schiwek4, Sarah Kühnemuth4, Frank-Jürgen Methner4, Matthias Rädle1
1CeMOS Research and Transfer Center, Technische Hochschule Mannheim, 68163 Mannheim, Germany
2SAT Anlagentechnik GmbH, 25578 Daegeling, Germany
3Lummus Novolen Technology GmbH, 68165 Mannheim, Germany
4Institute of Food Technology and Food Chemistry, Department of Brewing and Beverage Technology, Technical University, 13355 Berlin, Germany
Gas chromatography ion mobility spectrometry (GC-IMS) dataset of honey samples with different botanical origins
Journal: Data in Brief, https://doi.org/10.1016/j.dib.2024.110532, IF: 1,2
Joscha Christmann1, 2, Sascha Rohn2, Philipp Weller1
1 Institute for Instrumental Analytics and Bioanalysis, Technische Hochschule Mannheim, Paul-Wittsack-Straße 10, 68163 Mannheim, Germany.
2 Department of Food Chemistry and Analysis, Institute of Food, Technology and Food Chemistry, Technische Universität Berlin, TIB 4/3-1, Gustav-Meyer-Allee 25, 13355 Berlin, Germany.
Benchtop volatilomics supercharged: How machine learning based design of experiment helps optimizing untargeted GC-IMS gas phase metabolomics
Journal: Talanta, https://doi.org/10.1016/j.talanta.2024.125788, IF: 6,1
Hadi Parastar1,2, Philipp Weller1
1Department of Chemistry, Sharif University of Technology, P.O. Box 11155-9516, Tehran, Iran
2Institute for Instrumental Analytics and Bioanalytics, Technische Hochschule Mannheim, 68163, Mannheim, Germany
Isolation, characterisation and description of the roseoflavin producer Streptomyces berlinensis sp. nov.
Journal: Environmental Microbiology Reports, DOI: 10.1111/1758-2229.13266, IF: 4,06
Jimmy Jonathan Liunardo1, Sebastien Messerli1, Ann-Kathrin Gregotsch1, Sonja Lang1, Kerstin Schlosser1, Christian Rückert-Reed2, 3, Tobias Busche2, Jörn Kalinowski3, Martin Zischka4, Philipp Weller4, Imen Nouioui5, Meina Neumann-Schaal5, Chandra Risdian6, 7, Joachim Wink6, 8, Matthias Mack1
1Institute for Technical Microbiology, Department of Biotechnology, Technische Hochschule Mannheim, Mannheim, Germany.
2Medical School East Westphalia-Lippe, Bielefeld University, Bielefeld, Germany.
3Technology Platform Genomics, Center for Biotechnology, Bielefeld University, Bielefeld, Germany.
4Institute for Instrumental Analytics and Bioanalytics, Department of Biotechnology, Technische Hochschule Mannheim, Mannheim, Germany.
5Leibniz-Institute DSMZ-German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany.
6Department of Microbial Strain Collection, Helmholtz Centre for Infection Research, Braunschweig, Germany.
7Research Center for Applied Microbiology, National Research and Innovation Agency (BRIN), Bandung, Indonesia.
8German Centre for Infection Research (DZIF), Partner Site Hannover-Braunschweig, Braunschweig, Germany.
Investigation of interfacial mass transfer phenomena applying non-invasive Raman imaging and density gradient theory
Journal: Chemical Engineering Science, https://doi.org/10.1016/j.ces.2023.119672, IF: 4,9
J. Deuerling1, A. Alsalih1, R. Nagl2, T. Zeiner2, J.-U. Repke3, M. Rädle1
1Center for Mass Spectrometry and Optical Spectroscopy – CeMOS, University of Applied Sciences, Mannheim 68163, Germany
2Process Systems Engineering, Graz University of Technology, Graz 8010, Austria
3Process Dynamics and Operations Group – dbta, Technische Universität Berlin, Berlin 10623, Germany
Nontargeted Volatile Metabolite Screening and Microbial Contamination Detection in Fermentation Processes by Headspace GC-IMS
Journal: Anal. Chem, 10.1021/acs.analchem.3c04857, IF: 7,4
Joscha Christmann1, 2, Manuel Weber1, Sascha Rohn2, Philipp Weller1
1Institute for Instrumental Analytics and Bioanalysis, Technische Hochschule Mannheim, Paul-Wittsack-Straße 10, 68163 Mannheim, Germany.
2Department of Food Chemistry and Analysis, Institute of Food Technology and Food Chemistry, Technische Universität Berlin, TIB 4/3-1, Gustav-Meyer-Allee 25, 13355 Berlin, Germany.
pyM2aia: Python interface for mass spectrometry imaging with focus on deep learning
Journal: Bioinformatics, https://doi.org/10.1093/bioinformatics/btae133, IF: 6,9
Jonas Cordes1,2, Thomas Enzlein3, Carsten Hopf2,3,4, Ivo Wolf1
1Faculty of Computer Science, Technische Hochschule Mannheim, Mannheim 68163, Germany
2Medical Faculty Mannheim, Heidelberg University, Mannheim 68167, Germany
3Center for Mass Spectrometry and Optical Spectroscopy, Technische Hochschule Mannheim, Mannheim, Germany
4Medical Faculty, Heidelberg University, Heidelberg 69120, Germany
Sympathetic innervation in skeletal muscle and its role at the neuromuscular junction
Journal: Journal of Muscle Research and Cell Motility, https://doi.org/10.1007/s10974-024-09665-9, IF: 2,7
Rüdiger Rudolf1, 2 ,3, Isis C. Kettelhut4 and Luiz Carlos C. Navegantes5
1Center for Mass Spectrometry and Optical Spectroscopy, Technische Hochschule Mannheim, 68163 Mannheim, Germany
2Interdisciplinary Center for Neurosciences, Heidelberg University, 69117 Heidelberg, Germany
3Mannheim Center for Translational Neuroscience, Medical Faculty Mannheim Heidelberg University, 69167 Mannheim, Germany
4Department of Biochemistry & Immunology, Ribeirão Preto Medical School, University of São Paulo, Ribeirão Preto-SP, 14049900 Brazil
5Department of Physiology, Ribeirão Preto Medical School, University of São Paulo, Ribeirão Preto-SP, 14049900 Brazil
Automated 2D peak detection in gas chromatography-ion mobility spectrometry through persistent homology
Journal: Analytica Chimica Acta, https://doi.org/10.1016/j.aca.2024.342204, IF: 6,9
Hadi Parastar1,2, Joscha Christmann2, Philipp Weller2
1Department of Chemistry, Sharif University of Technology, P.O. Box 11155-9516, Tehran, Iran
2Institute for Instrumental Analytics and Bioanalytics, Technische Hochschule Mannheim, 68163, Mannheim, Germany
Surgical phase and instrument recognition: how to identify appropriate dataset splits
Journal: Int J CARS, https://doi.org/10.1007/s11548-024-03063-9, IF: 3,0
Georgii Kostiuchik1 ,2, Lalith Sharan3, 4, Benedikt Mayer5, Ivo Wolf6, Bernhard Preim5, Sandy Engelhardt3, 4
1 Department of Cardiac Surgery, Heidelberg University Hospital, Heidelberg, Germany. georgii.kostiuchik@med.uni-heidelberg.de
2 DZHK (German Centre for Cardiovascular Research), Partner Site Heidelberg/Mannheim, Heidelberg, Germany. georgii.kostiuchik@med.uni-heidelberg.de
3 Department of Cardiac Surgery, Heidelberg University Hospital, Heidelberg, Germany
4 DZHK (German Centre for Cardiovascular Research), Partner Site Heidelberg/Mannheim, Heidelberg, Germany
5 Department of Simulation and Graphics, University of Magdeburg, Magdeburg, Germany
6 Department of Computer Science, Technische Hochschule Mannheim, Mannheim, Germany
PerSurge (NOA-30) phase II trial of perampanel treatment around surgery in patients with progressive glioblastoma
Journal: BMC Cancer 24, https://doi.org/10.1186/s12885-024-11846-1, IF: 3,8
Sophie Heuer1, 2, Ina Burghaus3, Maria Gose3, Tobias Kessler1, 2, Felix Sahm4, 5, Philipp Vollmuth6, Varun Venkataramani1, 2, 7, Dirk Hoffmann1, 2, Matthias Schlesner8, 9, Miriam Ratliff2, 10, Carsten Hopf11, 12,13, Ulrich Herrlinger14, Franz Ricklefs15, Martin Bendszus6, Sandro M. Krieg16, Antje Wick1, Wolfgang Wick1, 2, Frank Winkler17, 18
1 Neurology Clinic and National Center for Tumor Diseases, University Hospital Heidelberg, INF 400, 69120, Heidelberg, Germany.
2 Clinical Cooperation Unit Neurooncology, German Cancer Consortium (DKTK), German Cancer Research Center (DKFZ), 69120, Heidelberg, Germany.
3 Coordination Centre for Clinical Trials (KKS) Heidelberg, 69120, Heidelberg, Germany.
4 Department of Neuropathology, University Hospital Heidelberg, INF 224, 69120, Heidelberg, Germany.
5 CCU Neuropathology, German Consortium for Translational Cancer Research (DKTK), Geman Cancer Research Center (DKFZ), Heidelberg, Germany.
6 Department of Neuroradiology, University Hospital Heidelberg, INF 400, 69120, Heidelberg, Germany.
7 Department of Functional Neuroanatomy, Institute for Anatomy and Cell Biology, Heidelberg University, Heidelberg, Germany.
8 German Cancer Research Center (DKFZ), 69120, Heidelberg, Germany.
9 Biomedical Informatics, Data Mining and Data Analytics, University of Augsburg, Augsburg, Germany.
10 Neurosurgery Clinic, University Hospital Mannheim, 68167, Mannheim, Germany.
11 Center for Mass Spectrometry and Optical Spectroscopy (CeMOS), Technische Hochschule Mannheim, Paul-Wittsack Str. 10, 68163, Mannheim, Germany.
12 Medical Faculty, Heidelberg University, Heidelberg, Germany.
13 Mannheim Center for Translational Neuroscience (MCTN), Medical Faculty Mannheim, Heidelberg University, Heidelberg, Germany.
14 Division of Clinical Neurooncology, Department of Neurology and Centre of Integrated Oncology, University Hospital Bonn, Bonn, Germany.
15 Department of Neurosurgery, University Hospital Eppendorf, Martinistr. 52, 20246, Hamburg, Germany.
16 Department of Neurosurgery, University Hospital Heidelberg, Heidelberg, Germany.
17 Neurology Clinic and National Center for Tumor Diseases, University Hospital Heidelberg, INF 400, 69120, Heidelberg, Germany. Frank.Winkler@med.uni-heidelberg.de.
18 Clinical Cooperation Unit Neurooncology, German Cancer Consortium (DKTK), German Cancer Research Center (DKFZ), 69120, Heidelberg, Germany. Frank.Winkler@med.uni-heidelberg.de.
High-Throughput Miniaturized Synthesis of PROTAC-Like Molecules
Journal: Small, https://doi.org/10.1002/smll.202307215, IF: 13,3
Ye Tian1, Maximilian Seifermann 1, Liana Bauer1, Charlotte Luchena1, Janne J. Wiedmann1, Stefan Schmidt2, Alexander Geisel2, Sergii Afonin3, Julius Höpfner1, Marius Brehm1, Xinyong Liu4, Carsten Hopf2, Anna A. Popova1, Pavel A. Levkin1
1Institute of Biological and Chemical Systems-Functional Molecular Systems (IBCS-FMS), Karlsruhe Institute of Technology (KIT), Hermann-von Helmholtz-Platz 1, 76344 Eggenstein-Leopoldshafen, Germany
2Center for Mass Spectrometry and Optical Spectroscopy (CeMOS), University of Applied Sciences Mannheim, Paul-Wittsack-Straße 10, 68163 Mannheim, Germany
3Institute of Biological Interfaces (IBG-2), Karlsruhe Institute of Technology (KIT), POB 3640, 76021 Karlsruhe, Germany
4Department of Medicinal Chemistry, Key Laboratory of Chemical Biology (Ministry of Education), School of Pharmaceutical Sciences, Shandong University, Wenhuaxi Road 44, Jinan, 250012 China
Myosin Va: Capturing cAMP for synaptic plasticity
Journal: Frontiers in Physiology, 10.3389/fphys.2023.1342994, IF: 4,0
Rüdiger Rudolf1,2,3
1Center for Mass Spectrometry and Optical Spectroscopy (CeMOS), Technische Hochschule Mannheim, Mannheim, Germany
2Interdisciplinary Center for Neurosciences, Heidelberg University, Heidelberg, Germany
3Mannheim Center for Translational Neurosciences, Heidelberg University, Mannheim, Germany